MRI Studio Forum » ROI Editor

Slice-by-slice statistics

(2 posts)
  • Started 7 years ago by yongzhangdti
  • Latest reply from JHMI_Hangyi
  1. yongzhangdti

    Dear everybody,

    I am interested in the slice-by-slice statistics along the fiber tracks in the brainstem. I've registered individual DTI images to the JHU_MNI_SS atlas using DiffeoMap. But only the average across each whole fiber track can be calculated using ROIEditor with JHU_MNI_SS_WMPM_TypeIII as the WMPM type. Just wonder if there is any option so that we can convert the JHU_MNI_SS_WMPM_TypeIII map into individual ROIs so that I can have slice-by-slice statistics in the axial orientation. I did see the pre-defined fiber tracks provided by ROIEditor. But they don't include all the fiber tracks in the brainstem and they are not ROIs either. So no slice-by-slice statistics can be extracted using these pre-defined fiber tracks. Any help will be greatly appreciated!


    Posted 7 years ago #
  2. JHMI_Hangyi

    if the fiber tracks are obtained using DtiStudio, slice-by-slice statistics can be done by clicking "Statistics" button of the "Fiber" tab -> "Statistics Profile"...

    Posted 7 years ago #

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